The Ministry of Social Development added that the hurricane damaged plantations in Jalisco and Michoacán.
Peña Nieto praised Mexicans for their response to the hurricane.
Social Development Minister José Antonio Meade said that the affected population will be helped with temporary employment and housing reconstruction programs.
No deaths were immediately reported from the storm.
A local clinic in Las Juntas was torn from the ground a school disappeared.
Even though hurricane Patricia caused less damages than feared, it affected towns in the states of Colima, Jalisco, Michoacán and Nayarit.
The recovery phase is next: EPN
Peña Nieto points out on Twitter at the need to restore essential utilities in the affected areas.
Peña Nieto reported the lifting of the preventive alert in Jalisco, Colima, and Nayarit.
The precipitation was expected to intensify over the weekend as moisture from tropical depression Patricia, which struck the Pacific coast of Mexico on Friday as a very powerful hurricane.
Many tourists were earlier ordered by staff at their hotels to make for the city's convention center, which was designated by emergency services as a main shelter.